This section describes the mapping implemented to integrate metadata and links from UniProtKB/Swiss-Prot. The complete data dump "Reviewed (Swiss-Prot)" can be downloaded from here.
From this dataset, only the protein records linked to a PubMed publication are extracted.
The table below describes the mapping from the TEXT metadata format to the OpenAIRE Graph dump format. You can check an example of the text metadata here
|OpenAIRE Result field path||FASTA record field xpath||Notes|
|id in the form |
|clean and normalize the format of the date to be |
|prepend to the value |
|clean and normalize the format of the date to be YYYY-mm-dd|
|OpenAIRE Relation Semantic and inverse||Source/Target type||Notes|
|the mapping creates relationships between the BioEntity and the PubMed or DOI generating an unresolved target identifier|